Seastone doesn't remove DF powers, it drains the user to the point of not allowing them to consciously control them. Luffy is stretchy when chained by seastone, but he can't stretch himself at will. Buggy can be chopped up when chained and be fine, but he can't levitate his bits or control them. It's the difference between being submerged in water and being touched by the user of the Yami Yami no Mi, which actually negates DF powers.